Index

_

__init__() (spectra_cluster.analyser.cluster_features.ClusterAsFeatures method) (spectra_cluster.analyser.common.AbstractAnalyser method) (spectra_cluster.analyser.exporter.mgf_exporter.MgfExporter method) (spectra_cluster.analyser.id_transferer.IdTransferer method) (spectra_cluster.analyser.id_transferer.IdentificationReference method) (spectra_cluster.clustering_parser.ClusteringParser method) (spectra_cluster.objects.Cluster method) (spectra_cluster.objects.PSM method) (spectra_cluster.objects.PTM method) (spectra_cluster.objects.Spectrum method)

_ignore_cluster() (spectra_cluster.analyser.common.AbstractAnalyser method)

A

AbstractAnalyser (class in spectra_cluster.analyser.common)

add_resultfile_header() (spectra_cluster.analyser.cluster_features.ClusterAsFeatures method)

C

calculate_sequence_counts() (spectra_cluster.objects.Cluster static method) Cluster (class in spectra_cluster.objects)

ClusterAsFeatures (class in spectra_cluster.analyser.cluster_features) ClusteringParser (class in spectra_cluster.clustering_parser)

E

extract_basic_sample_name() (spectra_cluster.analyser.cluster_features.ClusterAsFeatures static method)

extract_main_cluster_psms() (spectra_cluster.analyser.id_transferer.IdTransferer static method)

G

get_clean_sequence_psms() (spectra_cluster.objects.Spectrum method) get_clean_sequences() (spectra_cluster.objects.Spectrum method) get_filename() (spectra_cluster.objects.Spectrum method) get_id() (spectra_cluster.objects.Spectrum method)

get_mass() (spectra_cluster.objects.Spectrum method) get_property() (spectra_cluster.objects.Spectrum method) get_spectra() (spectra_cluster.objects.Cluster method) get_title() (spectra_cluster.objects.Spectrum method)

I

IdentificationReference (class in spectra_cluster.analyser.id_transferer)

IdTransferer (class in spectra_cluster.analyser.id_transferer) is_identified() (spectra_cluster.objects.Spectrum method)

M

MgfExporter (class in spectra_cluster.analyser.exporter.mgf_exporter)

P

process_cluster() (spectra_cluster.analyser.cluster_features.ClusterAsFeatures method) (spectra_cluster.analyser.common.AbstractAnalyser method) (spectra_cluster.analyser.exporter.mgf_exporter.MgfExporter method) (spectra_cluster.analyser.id_transferer.IdTransferer method)

PSM (class in spectra_cluster.objects) PTM (class in spectra_cluster.objects)

S

set_spectra() (spectra_cluster.objects.Cluster method) spectra_cluster.objects (module) spectra_cluster.ui.cluster_features_cli (module) spectra_cluster.ui.cluster_parameter_extractor (module) spectra_cluster.ui.cluster_result_comparator (module) spectra_cluster.ui.cluster_spectra_extractor (module)

spectra_cluster.ui.clustering_stats (module) spectra_cluster.ui.consensus_spectrum_exporter (module) spectra_cluster.ui.mgf_search_result_annotator (module) spectra_cluster.ui.protein_annotator (module) spectra_cluster.ui.split_moff_file (module) spectra_cluster.ui.unique_fasta_extractor (module) Spectrum (class in spectra_cluster.objects)